2023

1. Lekshmy V. S, Preethi V, Karthik N, Arpitha G D, Chaitanya P M, Sathishraj R, Dhananjay Shindhe, Vemanna R S, Xinyou Yin, Paul C. Struik, Sheshshayee Sreeman (2023). Phenotyping and metabolome analysis reveal the role of AdoMetDC and Di19 genes in determining acquired tolerance to drought in rice. Physiologia plantarum. 175, 5:e13992
2. Joon HK, Thalor A, Gupta D. Machine learning analysis of lung squamous cell carcinoma gene expression datasets reveals novel prognostic signatures. Comput Biol Med. 2023 Aug 29;165:107430. doi: 10.1016/j.compbiomed.2023.107430. Online ahead of print. PMID: 37703712
3. Ruhal R, Ghosh M, Kumar V, Jain D. Mutation of putative glycosyl transferases PslC and PslI confers susceptibility to antibiotics and leads to drastic reduction in biofilm formation in Pseudomonas aeruginosa. Microbiology (Reading). 2023 Sep;169(9). doi: 10.1099/mic.0.001392. PMID: 37702709
4. Trivedi A, Kardam V, Inampudi KK, Vrati S, Gupta D, Singh A, Kayampeta SR, Appaiahgari MB, Sehgal D. Identification of a novel inhibitor of SARS-CoV-2 main protease: an in silico, biochemical, and cell-based approach. FEBS J. 2023 Sep 1. doi: 10.1111/febs.16947. Online ahead of print. PMID: 37657928 No abstract available.
5. TDuggal S, Rawat S, Siddqui G, Vishwakarma P, Samal S, Banerjee A, Vrati S. Dengue Virus Infection In Mice Induces Bone Marrow Myeloid Cell Differentiation And Generates Ly6glow Immature Neutrophils With Modulated Functions. J Leukoc Biol. 2023 Aug 30:qiad099. doi: 10.1093/jleuko/qiad099. Online ahead of print. PMID: 37648666.
6. Chhabra S, Kalia M. Guanylate-binding proteins in virus infection. Biochem Soc Trans. 2023 Aug 31;51(4):1621-1633. doi: 10.1042/BST20221500. PMID: 37534998.
7. Bhatnagar A, Burman N, Sharma E, Tyagi A, Khurana P, Khurana JP. Two splice forms of OsbZIP1, a homolog of AtHY5, function to regulate skotomorphogenesis and photomorphogenesis in rice. Plant Physiol. 2023 Aug 31;193(1):426-447. doi: 10.1093/plphys/kiad334. PMID: 37300540.
8. Kumar C, Mylavarapu SVS. Nucleolin is required for multiple centrosome-associated functions in early vertebrate mitosis. Chromosoma. 2023 Aug 24. doi: 10.1007/s00412-023-00808-4. Online ahead of print. PMID: 37615728
9. Halayal RY, Bagewadi ZK, Maliger RB, Al Jadidi S, Deshpande SH. Network pharmacology based anti-diabetic attributes of bioactive compounds from Ocimum gratissimum L. through computational approach. Saudi J Biol Sci. 2023 Sep;30(9):103766. doi: 10.1016/j.sjbs.2023.103766. Epub 2023 Aug 6. PMID: 37588570
10. Mehrotra T, Konar D, Pragasam AK, Kumar S, Jana P, Babele P, Paul D, Purohit A, Tanwar S, Bakshi S, Das S, Verma J, Talukdar D, Narendrakumar L, Kothidar A, Karmakar SP, Chaudhuri S, Pal S, Jain K, Srikanth CV, Sankar MJ, Atmakuri K, Agarwal R, Gaind R, Ballal M, Kammili N, Bhadra RK, Ramamurthy T, Nair GB, Das B. Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis. Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2305465120. doi: 10.1073/pnas.2305465120. Epub 2023 Aug 7. PMID: 37549252
11. Raheja H, George B, Tripathi SK, Saha S, Maiti TK, Das S. Hepatitis C virus non-structural proteins modulate cellular kinases for increased cytoplasmic abundance of host factor HuR and facilitate viral replication. PLoS Pathog. 2023 Aug 4;19(8):e1011552. doi: 10.1371/journal.ppat.1011552. Online ahead of print. PMID: 37540723
12. Kumar S, Verma R, Saha S, Agrahari AK, Shukla S, Singh ON, Berry U, Anurag, Maiti TK, Asthana S, Ranjith-Kumar CT, Surjit M. RNA-Protein Interactome at the Hepatitis E Virus Internal Ribosome Entry Site. Microbiol Spectr. 2023 Aug 17;11(4):e0282722. doi: 10.1128/spectrum.02827-22. Epub 2023 Jun 29. PMID: 37382527 Free PMC article.
13. Chhabra S, Kalia M. Guanylate-binding proteins in virus infection. Biochem Soc Trans. 2023 Aug 3:BST20221500. doi: 10.1042/BST20221500. Online ahead of print. PMID: 37534998
14. Agarwal S, Ghosh R, Verma G, Khadgawat R, Guchhait P. Alpha-ketoglutarate supplementation reduces inflammation and thrombosis in type 2 diabetes by suppressing leukocyte and platelet activation. Clin Exp Immunol. 2023 Jul 27:uxad086. doi: 10.1093/cei/uxad086. Online ahead of print. PMID: 37498307
15. Bharadwaj A, Sharma J, Singh J, Kumari M, Dargar T, Kalita B, Mathew SJ. Musculoskeletal defects associated with myosin heavy chain-embryonic loss of function are mediated by the YAP signaling pathway. EMBO Mol Med. 2023 Jul 26:e17187. doi: 10.15252/emmm.202217187. Online ahead of print. PMID: 37492882
16. Bhattacharjee E, Thiruvengadam R, Ayushi, Das C; GARBH-Ini Team; Wadhwa N, Natchu UCM, Kshetrapal P, Bhatnagar S, Majumder PP, Maitra A. Genetic variants associated with spontaneous preterm birth in women from India: a prospective cohort study. Lancet Reg Health Southeast Asia. 2023 Apr 18;14:100190. doi: 10.1016/j.lansea.2023.100190. eCollection 2023 Jul. PMID: 37492417
17. Sahu A, Pradhan D, Veer B, Kumar S, Singh R, Raza K, Rizvi MA, Jain AK, Verma S. In silico screening, synthesis, characterization and biological evaluation of novel anticancer agents as potential COX-2 inhibitors.Daru. 2023 Jul 15. doi: 10.1007/s40199-023-00467-x. Online ahead of print. PMID: 37454036
18. Biswas B, Rana A, Gupta N, Gupta I, Puria R, Thakur A. A Novel Robust Method Mimicking Human Substratum To Dissect the Heterogeneity of Candida auris Biofilm Formation.Microbiol Spectr. 2023 Jul 13:e0089223. doi: 10.1128/spectrum.00892-23. Online ahead of print. PMID: 37439683
19. Pal P, Khan MY, Sharma S, Kumar Y, Mangla N, Kaushal PS, Agarwal N. ResR/McdR-regulated protein translation machinery contributes to drug resilience in Mycobacterium tuberculosis. Commun Biol. 2023 Jul 11;6(1):708. doi: 10.1038/s42003-023-05059-8. PMID: 37433855
20. Kar A, Jain D, Kumar S, Rajput K, Pal S, Rana K, Kar R, Jha SK, Medatwal N, Yavvari PS, Pandey N, Mehta D, Sharma H, Bhattacharya D, Pradhan MK, Sharma RD, Srivastava A, Agrawal U, Mukhopadhyay A, Sengupta S, Patil VS, Bajaj A, Dasgupta U. A localized hydrogel-mediated chemotherapy causes immunogenic cell death via activation of ceramide-mediated unfolded protein response.Sci Adv. 2023 Jun 30;9(26):eadf2746. doi: 10.1126/sciadv.adf2746. Epub 2023 Jun 30. PMID: 37390205
21. Mirgane HA, More KS, Rode AB, Puyad AL, Bhosale SV.Molecular nanoarchitectonics of proton triggered tetraphenylethylene-based detector: colorimetric, reversible, and intracellular pH. Anal Methods. 2023 Jul 5. doi: 10.1039/d3ay00663h. Online ahead of print. PMID: 37404009
22. Yadav S, Parijat P, Krishnan V.Crystal structure of the pilus-specific sortase from early colonizing oral Streptococcus sanguinis captures an active open-lid conformation. Int J Biol Macromol. 2023 Jul 15;243:125183. doi: 10.1016/j.ijbiomac.2023.125183. Epub 2023 Jun 3. PMID: 37276901
23. Madni ZK, Kumar A, Kumar U, Jaiswal D, Salunke DM. Dynamics of lipid displacement inside the hydrophobic cavity of a nonspecific lipid transfer protein from Solanum melongena. J Biomol Struct Dyn. 2023 Jul-Aug;41(12):5839-5849. doi: 10.1080/07391102.2022.2097956. Epub 2022 Jul 15. PMID: 35838149
24. Kumar P, Zehra A, Saini M, Mathew SJ.Zeb1 and Tle3 are trans-factors that differentially regulate the expression of myosin heavy chain-embryonic and skeletal muscle differentiation. FASEB J. 2023 Aug;37(8):e23074. doi: 10.1096/fj.202201698RR. PMID: 37392376
25. Kar A, Jain D, Kumar S, Rajput K, Pal S, Rana K, Kar R, Jha SK, Medatwal N, Yavvari PS, Pandey N, Mehta D, Sharma H, Bhattacharya D, Pradhan MK, Sharma RD, Srivastava A, Agrawal U, Mukhopadhyay A, Sengupta S, Patil VS, Bajaj A, Dasgupta U.A localized hydrogel-mediated chemotherapy causes immunogenic cell death via activation of ceramide-mediated unfolded protein response. Sci Adv. 2023 Jun 30;9(26):eadf2746. doi: 10.1126/sciadv.adf2746. Epub 2023 Jun 30. PMID: 37390205 Free PMC article.
26. Kumar S, Verma R, Saha S, Agrahari AK, Shukla S, Singh ON, Berry U, Anurag, Maiti TK, Asthana S, Ranjith-Kumar CT, Surjit M.Microbiol Spectr. 2023 Jun 29:e0282722. doi: 10.1128/spectrum.02827-22. Online ahead of print. PMID: 37382527
27. Kumari I, Lakhanpal D, Swargam S, Nath Jha A.Leishmaniasis: Omics Approaches to Understand its Biology from Molecule to Cell Level.Curr Protein Pept Sci. 2023;24(3):229-239. doi: 10.2174/1389203724666230210123147. PMID: 36809951 Review.
28. Pant A, Maiti TK, Mahajan D, Das B.Human Gut Microbiota and Drug Metabolism.Microb Ecol. 2023 Jul;86(1):97-111. doi: 10.1007/s00248-022-02081-x. Epub 2022 Jul 23. PMID: 35869999 Free PMC article. Review.
29. Sakshi, Ragini, Saini A, Verma C, Mani I.Epigenetics in renal diseases.Prog Mol Biol Transl Sci. 2023;198:61-71. doi: 10.1016/bs.pmbts.2023.02.013. Epub 2023 Mar 31. PMID: 37225324
30. Bhatnagar A, Burman N, Sharma E, Tyagi A, Khurana P, Khurana JP. Two splice forms of OsbZIP1, a homolog of AtHY5, function to regulate skoto- and photo-morphogenesis in rice.Plant Physiol. 2023 Jun 10:kiad334. doi: 10.1093/plphys/kiad334. Online ahead of print. PMID: 37300540
31. Kalakoti Y, Peter SC, Gawande S, Sundar D.Modulation of DNA-protein Interactions by Proximal Genetic Elements as Uncovered by Interpretable Deep Learning.J Mol Biol. 2023 Jul 1;435(13):168121. doi: 10.1016/j.jmb.2023.168121. Epub 2023 Apr 24. PMID: 37100167
32. Ragini, Sakshi, Mani I, Singh V.Applications of bioinformatics in epigenetics.Prog Mol Biol Transl Sci. 2023;198:1-13. doi: 10.1016/bs.pmbts.2023.03.023. Epub 2023 Apr 20. PMID: 37225316
33. Markandey M, Bajaj A, Verma M, Virmani S, Singh MK, Gaur P, Das P, Srikanth CV, Makharia G, Kedia S, Ahuja V.Fecal microbiota transplantation refurbishes the crypt-associated microbiota in ulcerative colitis.iScience. 2023 Apr 23;26(5):106738. doi: 10.1016/j.isci.2023.106738. eCollection 2023 May 19. PMID: 37216124 Free PMC article.
34. Goel N, Ghosh M, Jain D, Sinha R, Khare SK. Inhibition and eradication of Pseudomonas aeruginosa biofilms by secondary metabolites of Nocardiopsis lucentensisEMB25. RSC Med Chem. 2023 Mar 7;14(4):745-756. doi: 10.1039/d2md00439a. eCollection 2023 Apr 26. PMID: 37122537
35. Yadav K, Arora D, Jatain I, Dubey KK, Dhaka N, Kaur I, Adlakha N.Combining in silico and in vitro approaches to understand the involvement of MEP and shikimate pathway in Agrobacterium tumefaciens for enhanced CoQ10 production. J Appl Microbiol. 2023 May 9:lxad097. doi: 10.1093/jambio/lxad097. Online ahead of print. PMID: 37160352
36. Nissa MU, Pinto N, Ghosh B, Singh U, Goswami M, Srivastava S. Proteomic analysis of liver tissue reveals Aeromonas hydrophila infection mediated modulation of host metabolic pathways in Labeo rohita. J Proteomics. 2023 May 15;279:104870. doi: 10.1016/j.jprot.2023.104870. Epub 2023 Mar 10. PMID: 36906258
37. Malik S, Maurya A, Khare SK, Srivastava KR. Computational Exploration of Bio-Degradation Patterns of Various Plastic Types. Polymers (Basel). 2023 Mar 20;15(6):1540. doi: 10.3390/polym15061540. PMID: 36987320
38. Sharma N, Sharma A, Motiani RK. A novel gain of function mutation in TPC2 reiterates pH-pigmentation interplay: Emerging role of ionic homeostasis as a master pigmentation regulator.Cell Calcium. 2023 Feb 18;111:102705. doi: 10.1016/j.ceca.2023.102705. Online ahead of print. PMID: 36841139
39. Kalakoti Y, Clarancia Peter S, Gawande S, Sundar D. Modulation of DNA-protein interactions by proximal genetic elements as uncovered by interpretable deep learning. J Mol Biol. 2023 Apr 24:168121. doi: 10.1016/j.jmb.2023.168121. Online ahead of print. PMID: 37100167
40. Satange R, Jin P, Hou MH, Rode AB.Editorial: Non-canonical nucleic acid structures, functions and their applications for understanding human genetic diseases.Front Genet. 2023 Apr 5;14:1188978. doi: 10.3389/fgene.2023.1188978. eCollection 2023. PMID: 37091795
41. Tyagi N, Mehla K, Gupta D. Deciphering novel common gene signatures for rheumatoid arthritis and systemic lupus erythematosus by integrative analysis of transcriptomic profiles.PLoS One. 2023 Mar 16;18(3):e0281637. doi: 10.1371/journal.pone.0281637. eCollection 2023. PMID: 36928613 Free PMC article.
42. Dutta H, K M S, Aski MS, Mishra GP, Sinha SK, Vijay D, C T MP, Das S, Pawar PA, Mishra DC, Singh AK, Kumar A, Tripathi K, Kumar RR, Gupta S, Kumar S, Dikshit HK. Morpho-biochemical characterization of a RIL population for seed parameters and identification of candidate genes regulating seed size trait in lentil (Lens culinaris Medik.).Front Plant Sci. 2023 Feb 15;14:1091432. doi: 10.3389/fpls.2023.1091432. eCollection 2023. PMID: 36875597 Free PMC article.
43. Khari A, Biswas B, Gangwar G, Thakur A, Puria R. Candida auris biofilm: a review on model to mechanism conservation.Expert Rev Anti Infect Ther. 2023 Mar;21(3):295-308. doi: 10.1080/14787210.2023.2179036. Epub 2023 Feb 16. PMID: 36755419
44. Sharma S, Malhotra L, Mukherjee P, Kaur N, Krishanlata T, Srikanth CV, Mishra V, Banerjee BD, Ethayathulla AS, Sharma RS. Putative interactions between transthyretin and endosulfan II and its relevance in breast cancer.Int J Biol Macromol. 2023 Feb 14:123670. doi: 10.1016/j.ijbiomac.2023.123670. Online ahead of print. PMID: 36796556
45. Ragini, Sakshi, Saini A, Mani I. Endocytosis and signaling of 5-HT1A receptor.Prog Mol Biol Transl Sci. 2023;196:113-123. doi: 10.1016/bs.pmbts.2022.11.002. Epub 2022 Dec 22. PMID: 36813354
46. Kumari I, Lakhanpal D, Swargam S, Nath Jha A. Leishmaniasis: Omics approaches to understand its biology from molecule to cell level.Curr Protein Pept Sci. 2023 Feb 10. doi: 10.2174/1389203724666230210123147. Online ahead of print. PMID: 36809951
47. Sujitha D, Jalendra Kumar H. G, Thapliayal G, Pal G, Vanitha P. A, Uttarkar A, Patil M, Rajashekar Reddy B. H, Niranjan V, Rayalcheruvu U, Geetha G, Udayakumar M, Vemanna RS. Transcription factors controlling the expression of oxidative stress associated genes in rice (Oryza sativa L.).Plant Biotechnology Reports. 2023. https://doi.org/10.1007/s11816-023-00819-8.
48. Kumar V, Sari AN, Meidinna HN, Kaul A, Basu B, Ishida Y, Terao K, Kaul SC, Vrati S, Sundar D, Wadhwa R.Computational and experimental evidence of the anti-COVID-19 potential of honeybee propolis ingredients, caffeic acid phenethyl ester and artepillin c.Phytother Res. 2023 Feb 9. doi: 10.1002/ptr.7717. Online ahead of print. PMID: 36757055 No abstract available.
49. Khari A, Biswas B, Gangwar G, Thakur A, Puria R. Candida auris biofilm: a review on model to mechanism conservation.Expert Rev Anti Infect Ther. 2023 Feb 8. doi: 10.1080/14787210.2023.2179036. Online ahead of print. PMID: 36755419
50. Saini J, Thapa U, Bandyopadhyay B, Vrati S, Banerjee A.Knockdown of NEAT1 restricts dengue virus replication by augmenting interferon alpha-inducible protein 27 via the RIG-I pathway.J Gen Virol. 2023 Jan;104(1). doi: 10.1099/jgv.0.001823. PMID: 36748518
51. Kar A, Medatwal N, Rajput K, Mandal S, Pani T, Khan A, Sharma P, Oberoi AS, Vishwakarma G, Deo S, Jolly MK, Bajaj A, Dasgupta U.Unique Sphingolipid Signature Identifies Luminal and Triple-Negative Breast Cancer Subtypes.Int J Cancer. 2023 Jan 5. doi: 10.1002/ijc.34423. Online ahead of print. PMID: 36602287
52. Saikia J, Kotoky R, Debnath R, Kumar N, Gogoi P, Yadav A, Saikia R.De novogenomic analysis ofEnterobacter asburiaeEBRJ12, a plant growth-promoting rhizobacteria isolated from the rhizosphere of Phaseolus vulgarisL.J Appl Microbiol. 2022 Dec 29:lxac090. doi: 10.1093/jambio/lxac090. Online ahead of print. PMID: 36728698